BioMoDes: A Repository of Tools for Biomolecular Modeling and Design

Page included in category BioMoDes and series BioMoDes

Contents

BioMoDes is a curated, weekly-updated repository of computational tools for biomolecular modeling and design — structure prediction, sequence/structure design, property prediction and analysis, search and alignment, small-molecule design, and more. Each entry links back to the original paper, code, and any web server or Colab notebook available.

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– tools tracked – categories

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Ask a real question about the catalog and get an answer grounded in the actual entries, with sources. Try one of these, or type your own:

Explore the BioMoDes Atlas — the same catalog mapped by category, technique, or timeline, with a toggle to switch.

Compare Tools — pick any two tools and see them side by side, with shared techniques highlighted.

Categories

1. Biomolecular Structure Prediction SOTA and emerging tools for predicting protein, complex, and biomolecular structure. 3 tools 2. Biomolecular Design De novo protein, peptide, antibody, and binder design tools. 15 tools 3. Property Prediction & Analysis Tools for predicting and analyzing biomolecular properties. 4 tools 4. Search, Alignment & DB Management Protein search, alignment, and database management tools. 2 tools 5. Small-molecule Design & Prediction Small-molecule design and property prediction tools. 1 tool 6. Review Articles Curated review articles in biomolecular modeling and design. 2 entries 7. Protein Engineering Applications Enzyme engineering, therapeutics, biosensors, directed evolution, and more. 3 tools 8. In the News Notable news, announcements, and developments in the field. news

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