BioMoDes: A Repository of Tools for Biomolecular Modeling and Design
Contents
BioMoDes is a curated, weekly-updated repository of computational tools for biomolecular modeling and design — structure prediction, sequence/structure design, property prediction and analysis, search and alignment, small-molecule design, and more. Each entry links back to the original paper, code, and any web server or Colab notebook available.
30 tools tracked
8 categories
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Categories
1. Biomolecular Structure Prediction
SOTA and emerging tools for predicting protein, complex, and biomolecular structure.
3 tools
2. Biomolecular Design
De novo protein, peptide, antibody, and binder design tools.
15 tools
3. Property Prediction & Analysis
Tools for predicting and analyzing biomolecular properties.
4 tools
4. Search, Alignment & DB Management
Protein search, alignment, and database management tools.
2 tools
5. Small-molecule Design & Prediction
Small-molecule design and property prediction tools.
1 tool
6. Review Articles
Curated review articles in biomolecular modeling and design.
2 entries
7. Protein Engineering Applications
Enzyme engineering, therapeutics, biosensors, directed evolution, and more.
3 tools
8. In the News
Notable news, announcements, and developments in the field.
news
Recently Added
- Jul 22, 2026AI-redesigned starting points and outcomes enhance protein evolution
- Jul 16, 2026NovoTags
- Jul 16, 2026SynTnpBs
- Jul 15, 2026PBCNet2.0
- Apr 15, 2026DualGPT-AB
- Feb 7, 2026Subtimizer
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