All Posts

2026

 AbeeBlog 07-18

Redesign Then Evolve: AI-Redesigned Starting Points Enhance Directed Protein Evolution 07-25

OpenDDE: An Open-Source All-Atom Foundation Model for Biomolecular Structure Prediction and Drug Discovery 07-22

SynTnpBs: Redesigned CRISPR-Like Nucleases Using AI-Based Protein Design with Evolutionary Constraints 07-19

NovoTags: Designing Proteins That Recognize Specific Fluorescent Dyes 07-18

7. Protein Engineering Applications 06-08

8. In the News 06-08

6. Review Articles 05-25

2024

 BioMoDes Newsletter 06-22

BioMoDes Newsletter -- Issue #05 07-20

BioMoDes Newsletter -- Issue #04 07-13

BioMoDes Newsletter -- Issue #03 07-06

BioMoDes Newsletter -- Issue #02 06-29

BioMoDes Newsletter -- Issue #01 06-22

 BioMoDes Repository 04-01

5. Small-molecule Design and Prediction Tools 04-01

4. Protein Search, Alignment, & DB Management Tools 04-01

3. Biomolecular Property Prediction and Analysis Tools 04-01

2. Biomolecular Design Tools 04-01

1. Biomolecular Structure Prediction Tools 04-01

2023

 CHAPERONg Tutorials 07-01

Tutorial 4: Umbrella Sampling of KEAP1 Kelch Domain-Inhibitor Complex 05-02

Tutorial 3: Automated MD Simulation of KEAP1 Kelch Domain-Inhibitor Complex 03-26

Tutorial 2: Automated MD Simulation of KEAP1 Kelch Domain in Water 03-26

Tutorial 1: Automated MD Simulation of Ubiquitin in Water 03-26

2022

 CHAPERONg Documentation 12-26

CHAPERONg Usage and Functionality 12-26

Automated Conventional MD Simulation 12-26

Automated Umbrella Sampling Simulation 12-26

Automated MD Simulation Trajectory Analyses - Part II 12-26

Automated MD Simulation Trajectory Analyses - Part I 12-26

Getting Started with CHAPERONg 11-01

Tools for Computational Biology and Chemistry 11-01

Resources 09-05

CHAPERONg Homepage 09-03